I have also kept the clutch in and shifted into first and there is still the clunking sound. I would rather have the clunking sound then have to replace my throw out bearing prematurely due to me always having the clutch engaged. I guess this is a normal sound that I have to get used to. Thanks all!!

 

I have the same and have read many posts that this is just the norm for this vehicle.

 

MY07, and mine does the same. nothing to worry about.

Dan

 

Try holding the clutch down for a couple seconds before you shift into 1st gear. Most manual cars I've driven have the 1st gear clunk but if you hold the clutch down for a couple seconds before hand, it's gone.

 

My 04 does the same. Seems normal....