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Kial I'm with you on the EMU, I think its perfectly capable of what you want to do. Only worries are timing, from what I've read stock ECU wont allow more than 5 degrees correction from stock adjustments (Someone correct me if I'm wrong). A shop I used to work at uses EMU's on their K24 turbo kits and they put out 300whp and 300ft lbs of tq, I realize NA is totally different but just an example.
This is sweet as hell. Cant wait to see the out come. Your doin some nice work man. I wouldnt no where to start when tearin a engine down like you did.